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Energy comparisons for the benchmark test set for free energy calculations.

Michael Shirts's talk from Wednesday, May 21st, 2014 at the Workshop for Free Energy Methods in Drug Design

2014 Free Energy Workshop slides

Input files for the tutorial "Absolute Binding Free Energy - Gromacs 2016"

Sample results for the tutorial "Absolute Binding Free Energy - Gromacs 2016"

Thermodynamic cycle shown in the tutorial "Absolute Binding Free Energy - Gromacs 2016"

...alysis.py results (sims with HREX) for the tutorial "Absolute Binding Free Energy - Gromacs 2016"

Ron Levy Presentation, 2014 Workshop on Free Energy Methods in Drug Design

Thermodynamic cycle for GROMACS 4.6 tutorial on absolute binding free energy of n-phenylglicinonitrile to T4 lysozyme

simple example script to add to the tutorial "Absolute Free Energy Calculations - Gromacs 2016"

Gromacs .mdp file for ethanol free energy calculations. This will need to be copied to nine new files, one for each

Example image of the binding free energy of ligand A and ligand B

...xylene in a Hamiltonian exchange simulation of an absolute alchemical free energy calculation in implicit solvent.

...mulation time (x-axis) for a Hamiltonian exchange absolute alchemical free energy calculation for p-xylene binding to T4 lysozyme L99A.

...example comes from a Hamiltonian exchange implicit solvent alchemical free energy calculation of p-xylene binding to T4 lysozyme L99A.