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Below is a list of the most recent file uploads. See the gallery of new files for a more visual overview.
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)- 14:14, 25 October 2012 Lnaden talk contribs uploaded File:T4-Tol-Imp.png (T4 Lysozyme and Toluene in an implicit solvent)
- 14:13, 25 October 2012 Lnaden talk contribs uploaded File:Tol-Nosol.png (Toluene up close, again but for tandem use with example)
- 14:12, 25 October 2012 Lnaden talk contribs uploaded File:Tol-Imp.png (Implicit solvent toluene)
- 16:47, 16 October 2012 Lnaden talk contribs uploaded File:Ethanol in vac small.png (Ethanol in a vacuum environment, small picture to better see whats going on. Rendered in VMD)
- 16:46, 16 October 2012 Lnaden talk contribs uploaded File:TIP3P-Ethanol small.png (Small water box with an ethanol in place. Not equilibrated, rendered in VMD)
- 16:45, 16 October 2012 Lnaden talk contribs uploaded File:TIP3PBox small.png (small TIP3PBox with an ethanol cavity. Not equilibrated, rendered in VMD)
- 16:37, 10 October 2012 Lnaden talk contribs uploaded File:Toluene Phenol Topology.png
- 13:54, 10 October 2012 Lnaden talk contribs uploaded File:Doublearrowupdown.png (Double arrow, pointing down and up)
- 09:54, 10 October 2012 Lnaden talk contribs uploaded File:Blackbox.png (A nice simple black box, for use in examples)
- 09:17, 10 October 2012 Lnaden talk contribs uploaded File:Plus sign.jpg (Simple plus sign, for use in examples )
- 09:12, 10 October 2012 Lnaden talk contribs uploaded File:Ethanol in vac.png (Ethanol by itself, but the boundary is expanded to show a "box" that it is free to explore. All atom, rendered in VMD)
- 08:57, 10 October 2012 Lnaden talk contribs uploaded a new version of File:Waterbox.png (New water box based on where an ethanol should be instead of ethane.)
- 08:55, 10 October 2012 Lnaden talk contribs uploaded File:TIP3P-Ethanol.png (Ethanol in a TIP3P water box. All atom, rendered in VMD)
- 08:55, 10 October 2012 Lnaden talk contribs uploaded File:Ethanol.png (Ethanol, all atom, rendered in VMD)
- 14:53, 9 October 2012 Lnaden talk contribs uploaded File:Doublearrow.png
- 13:41, 9 October 2012 Lnaden talk contribs uploaded File:Toluene.png (Toluene, Rendered in VMD)
- 13:40, 9 October 2012 Lnaden talk contribs uploaded File:T4-Toluene.png (T4-lysozyme with a Toluene at the binding site, Rendered in VMD)
- 13:40, 9 October 2012 Lnaden talk contribs uploaded File:T4-Phenol.png (T4-lysozyme with a Phenol at the binding site, Rendered in VMD)
- 13:39, 9 October 2012 Lnaden talk contribs uploaded File:T4-lysozyme.png (T4-lysozyme protein in implicit solvent. Rendered in VMD)
- 13:38, 9 October 2012 Lnaden talk contribs uploaded File:Phenol.png (Phenol, rendered in VMD)
- 12:58, 9 October 2012 Lnaden talk contribs uploaded File:Waterbox.png (TIP3P water box, not equilibrated, void present where an ethane should be)
- 12:57, 9 October 2012 Lnaden talk contribs uploaded File:Ethanebox.png (Box of TIP3P water molecules and an ethane)
- 12:54, 30 September 2012 Lnaden talk contribs uploaded File:Bootstrap Comparison.png
- 13:50, 28 September 2012 Lnaden talk contribs uploaded File:Cmbox deletion.png
- 13:42, 28 September 2012 Lnaden talk contribs uploaded File:Template-info.png
- 15:12, 26 September 2012 Lnaden talk contribs uploaded File:Bind example.png (Example image of the binding free energy of ligand A and ligand B)
- 16:54, 19 September 2012 Lnaden talk contribs uploaded a new version of File:Linear LJ transformation.png (Mediawiki is flipping out apperntly)
- 16:53, 19 September 2012 Lnaden talk contribs uploaded a new version of File:Linear LJ transformation.png (Trying to upload the right file this time...)
- 16:53, 19 September 2012 Lnaden talk contribs uploaded a new version of File:Linear LJ transformation.png (Added a new copy with a shorter max length.)
- 15:52, 19 September 2012 Lnaden talk contribs uploaded File:Both topologies.png (Image showing a sample of both topology layouts.)
- 10:35, 19 September 2012 Lnaden talk contribs uploaded File:Linear LJ transformation.png (Image of the linear scaling of a Lennard-Jones potential. )
- 09:46, 13 September 2012 Lnaden talk contribs uploaded File:Ambox notice.png
- 08:45, 13 September 2012 Lnaden talk contribs uploaded a new version of File:Transformation small.png (Trying to see if I can get a transparent background)
- 08:44, 13 September 2012 Lnaden talk contribs uploaded File:Transformation small.png (For use with the Fundamentals template)
- 10:48, 28 August 2011 Michael Shirts talk contribs uploaded a new version of File:DESMOND.tgz (cleaned up anthracene test case)
- 10:40, 28 August 2011 Michael Shirts talk contribs uploaded a new version of File:AMBER.tgz (Cleaned up anthracene test case)
- 10:39, 28 August 2011 Michael Shirts talk contribs uploaded a new version of File:GROMACS.tgz (cleaned up anthracene test case)
- 10:36, 28 August 2011 Michael Shirts talk contribs uploaded a new version of File:Energy comparisons.tgz (cleaned up anthracene test case)
- 13:05, 18 May 2011 Michael Shirts talk contribs uploaded File:README.pdf (READ ME description of the benchmark system example files)
- 13:03, 18 May 2011 Michael Shirts talk contribs uploaded File:DESMOND.tgz (DESMOND files for benchmark test set)
- 13:02, 18 May 2011 Michael Shirts talk contribs uploaded File:AMBER.tgz (AMBER files for benchmark test set)
- 13:01, 18 May 2011 Michael Shirts talk contribs uploaded File:GROMACS.tgz (GROMACS files for benchmark test sets)
- 18:34, 16 May 2011 Michael Shirts talk contribs uploaded a new version of File:Energy comparisons.tgz (Updated names)
- 18:22, 16 May 2011 Michael Shirts talk contribs uploaded a new version of File:Energy comparisons.tgz
- 18:18, 16 May 2011 Michael Shirts talk contribs uploaded File:Energy comparisons.tgz (Energy comparisons for the benchmark test set for free energy calculations.)
- 01:04, 29 October 2007 Michael Shirts talk contribs uploaded File:PyMBAR.tgz (A Python implementation of the MBAR method described in [1]. REFERENCES [1] Shirts MR and Chodera JD. Optimal analysis of multiple equilibrium simulations. Submitted, 2007)
- 18:28, 17 October 2007 David Mobley talk contribs uploaded File:Amb2gmx.gz
- 18:20, 17 October 2007 David Mobley talk contribs uploaded File:PyMLWHAM.tgz
- 19:52, 16 October 2007 (no username available) (no username available) uploaded File:Tut.tgz (Zipped tutorial on how to use softcore potentials in amber10)
- 18:39, 9 October 2007 John Chodera talk contribs uploaded File:Alchemistry.jpg (Alchemistry.org logo.)