File:Replica-round-trips.png

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Illustration of three replica trajectories in thermodynamic state index (y-axis) plotted as a function of simulation time (x-axis) for a Hamiltonian exchange absolute alchemical free energy calculation for p-xylene binding to T4 lysozyme L99A.

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current20:50, 22 December 2013Thumbnail for version as of 20:50, 22 December 20131,360 × 167 (55 KB)John Chodera (talk | contribs)Illustration of three replica trajectories in thermodynamic state index (y-axis) plotted as a function of simulation time (x-axis) for a Hamiltonian exchange absolute alchemical free energy calculation for p-xylene binding to T4 lysozyme L99A.

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